Wilke, C. O., J. L. Wang, C. Ofria, R. E. Lenski, and C. Adami. (2001) Evolution of Digital Organisms at High Mutation Rates Leads to Survival of the Flattest. Nature 412: 331–333.

Wilson, A. C., S. S. Carlson, and T. J. White. (1977) Biochemical Evolution. Annu Rev Biochem 46: 573–639.

Wochner, A., J. Attwater, A. Coulson, and P. Holliger. (2011) Ribozyme-Catalyzed Transcription of an Active Ribozyme. Science 332: 209–212.

Woese, C. (1967) The Genetic Code. New York: Harper & Row.

Woese, C. (1998) The Universal Ancestor. Proc Natl Acad Sci USA 95: 6,854—6,859.

Woese, C. R. (1987) Bacterial Evolution. Microbiol Rev 51: 221–271.

Woese, C. R. (2002) On the Evolution of Cells. Proc Natl Acad Sci USA 99: 8,742—8,747.

Woese, C. R., and G. E. Fox. (1977) The Concept of Cellular Evolution. J Mol Evol 10: 1–6.

Woese, C. R., and N. Goldenfeld. (2009) How the Microbial World Saved Evolution from the Scylla of Molecular Biology and the Charybdis of the Modern Synthesis. Microbiol Mol Biol Rev 73: 14–21.

Woese, C. R., O. Kandler, and M. L. Wheelis. (1990) Towards a Natural System of Organisms: Proposal for the Domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA 87: 4,576—4,579.

Wohlgemuth, I., M. Beringer, and M. V. Rodnina. (2006) Rapid Peptide Bond Formation on Isolated 50s Ribosomal Subunits. EMBO Rep 7: 699–703.

Wolf, Y. I., L. Aravind, N. V. Grishin, and E. V. Koonin. (1999a) Evolution of Aminoacyl-tRNA Synthetases — Analysis of Unique Domain Architectures and Phylogenetic Trees Reveals a Complex History of Horizontal Gene Transfer Events. Genome Res 9: 689–710.

Wolf, Y. I., S. E. Brenner, P. A. Bash, and E. V. Koonin. (1999b) Distribution of Protein Folds in the Three Superkingdoms of Life. Genome Res 9: 17–26.

Wolf, Y. I., L. Carmel, and E. V. Koonin. (2006) Unifying Measures of Gene Function and Evolution. Proc Biol Sci 273: 1,507—1,515.

Wolf, Y. I., I. V. Gopich, D. J. Lipman, and E. V. Koonin. (2010) Relative Contributions of Intrinsic Structural-Functional Constraints and Translation Rate to the Evolution of Protein-Coding Genes. Genome Biol Evol 2: 190–199.

Wolf, Y. I., and E. V. Koonin. (2007) On the Origin of the Translation System and the Genetic Code in the RNA World by Means of Natural Selection, Exaptation, and Subfunctionalization. Biol Direct 2: 14.

Wolf, Y. I., P. S. Novichkov, G. P. Karev, E. V. Koonin, and D. J. Lipman. (2009) The Universal Distribution of Evolutionary Rates of Genes and Distinct Characteristics of Eukaryotic Genes of Different Apparent Ages. Proc Natl Acad Sci USA 106: 7,273—7,280.

Wolf, Y. I., I. B. Rogozin, N. V. Grishin, and E. V. Koonin. (2002) Genome Trees and the Tree of Life. Trends Genet 18: 472–479.

Wolf, Y. I., I. B. Rogozin, A. S. Kondrashov, and E. V. Koonin. (2001) Genome Alignment, Evolution of Prokaryotic Genome Organization, and Prediction of Gene Function Using Genomic Context. Genome Res 11: 356–372.

Woods, R. J., J. E. Barrick, T. F. Cooper, U. Shrestha, M. R. Kauth, and R. E. Lenski. (2011) Second-Order Selection for Evolvability in a Large Escherichia Coli Population. Science 331: 1,433—1,436.

Woodson, S. A. (2010) Taming Free Energy Landscapes with RNA Chaperones. RNA Biol 7: 38–47.

Wozniak, R. A., and M. K. Waldor. (2010) Integrative and Conjugative Elements: Mosaic Mobile Genetic Elements Enabling Dynamic Lateral Gene Flow. Nat Rev Microbiol 8: 552–563.

Wright, G. D. (2007) The Antibiotic Resistome: The Nexus of Chemical and Genetic Diversity. Nat Rev Microbiol 5: 175–186.

Wu, D., S. C. Daugherty, S. E. Van Aken, G. H. Pai, K. L. Watkins, H. Khouri, L. J. Tallon, J. M. Zaborsky, H. E. Dunbar, P. L. Tran, N. A. Moran, and J. A. Eisen. (2006) Metabolic Complementarity and Genomics of the Dual Bacterial Symbiosis of Sharpshooters. PLoS Biol 4: e188.

Wunderlich, Z., and L. A. Mirny. (2009) Different Gene Regulation Strategies Revealed by Analysis of Binding Motifs. Trends Genet 25: 434–440.

Yang, D., Y. Oyaizu, H. Oyaizu, G. J. Olsen, and C. R. Woese. (1985) Mitochondrial Origins. Proc Natl Acad Sci USA 82: 4,443—4,447.

Yang, Z. (2007) Paml 4: Phylogenetic Analysis by Maximum Likelihood. Mol Biol Evol 24: 1,586—1,591.

Yarus, M. (1998) Amino Acids as RNA Ligands: A Direct-RNA-Template Theory for the Code’s Origin. J Mol Evol 47: 109–117.

Yarus, M., J. G. Caporaso, and R. Knight. (2005) Origins of the Genetic Code: The Escaped Triplet Theory. Annu Rev Biochem 74: 179–198.

Yarus, M., J. J. Widmann, and R. Knight. (2009) RNA — Amino Acid Binding: A Stereochemical Era for the Genetic Code. J Mol Evol 69: 406–429.

Yooseph, S., G. Sutton, D. B. Rusch, A. L. Halpern, S. J. Williamson, K. Remington, J. A. Eisen, K. B. Heidelberg, G. Manning, W. Li, L. Jaroszewski, P. Cieplak, C. S. Miller, H. Li, S. T. Mashiyama, M. P. Joachimiak, C. van Belle, J. M. Chandonia, D. A. Soergel, Y. Zhai, K. Natarajan, S. Lee, B. J. Raphael, V. Bafna, R. Friedman, S. E. Brenner, A. Godzik, D. Eisenberg, J. E. Dixon, S. Taylor, R. L. Strausberg, M. Frazier, and J. C. Venter. (2007) The Sorcerer Ii Global Ocean Sampling Expedition: Expanding the Universe of Protein Families. PLoS Biol 5: e16.

Yutin, N., K. S. Makarova, S. L. Mekhedov, Y. I. Wolf, and E. V. Koonin. (2008) The Deep Archaeal Roots of Eukaryotes. Mol Biol Evol 25: 1,619—1,630.

Yutin, N., M. Y. Wolf, Y. I. Wolf, and E. V. Koonin. (2009) The Origins of Phagocytosis and Eukaryogenesis. Biol Direct 4: 9.

Zhang, Y., C. Laing, M. Steele, K. Ziebell, R. Johnson, A. K. Benson, E. Taboada, and V. P. Gannon. (2007) Genome Evolution in Major Escherichia Coli O157:H7 Lineages. BMC Genomics 8: 121.

Zuckerkandl, E., and L. Pauling. (1965). Evolutionary Divergence and Convergence of Proteins in Bryson, V., and H. J. Vogel (eds). Evolving Genes and Proteins. New York: Academic Press, pp. 97–166.

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